Table III. Differential protein expression in the ΔndbC mutant versus the wild type

Proteins were quantified with DDA from cells grown in HC and LC and with SRM from LC-grown cells. The practical significance FC is in italic type when up-regulated (FC ≥ 1.3) and boldface type when down-regulated (FC ≤ −1.3; P ≤ 0.05) in the ΔndbC mutant relative to the wild type. NA, Not analyzed; ND, not detected.

ParameterProteinProtein SymbolHCDDAFCPLCDDAFCPLCSRMFCP
Cell divisionSll1633FtsZ−1.473.61E-04−1.434.65E-03−1.546.36E-05
Sll0169ZipN−1.018.58E-01−1.401.02E-02−1.587.78E-05
Sll0288MinC−1.544.37E-02−1.331.29E-02−1.454.99E-02
Sll0289MinD−1.421.99E-02−1.612.98E-04−1.603.39E-05
Ssl0546MinE−1.561.01E-02−1.393.46E-04−1.578.99E-05
Circadian clockSlr0757KaiB1−1.571.24E-03−1.692.04E-04NANA
Slr0758KaiC1−1.589.53E-04−1.472.71E-03NANA
Slr0115RpaA−1.085.97E-01−1.583.86E-03NANA
DNA repairSll0569RecA−1.503.63E-03−1.662.35E-04NANA
Slr6097−1.752.03E-01−5.161.41E-03NANA
Slr9101RepA1.503.50E-01−2.793.45E-03NANA
Sll1165MutS−1.199.65E-01−1.751.61E-02NANA
Transport and binding proteins
 Inorganic phosphate uptakeSll0681PstC11.223.46E-01−18.676.27E-05−12.212.00E-05
Sll0683PstB1−1.006.20E-01−6.853.06E-04−11.223.96E-04
Sll0684PstB1'1.016.12E-01−8.104.64E-03−8.262.19E-05
Sll0680PstS1−1.129.51E-01−2.781.61E-05−4.027.20E-03
Sll0679SphX1.262.61E-01−1.603.41E-02−1.631.65E-03
Slr1247PstS21.421.82E-01−1.343.85E-03−1.455.12E-03
Sll0540PstS−1.356.69E-01−3.164.21E-04−3.098.97E-06
 Nitrogen uptakeSll1451NrtB1.075.13E-01NDND−1.621.37E-03
Sll1452NrtC−1.232.49E-01−2.241.96E-02−1.586.15E-04
Sll1453NrtD−1.057.89E-01NDND−1.923.05E-03
Sll0108Amt1−1.125.38E-01−1.202.57E-02−1.302.93E-02
Slr0447UrtA−1.671.02E-05−1.914.61E-04NANA
Sll0764UrtDNDND−1.716.98E-04NANA
Sll0374UrtE−1.492.79E-02−1.341.45E-02NANA
 HCO3 uptakeSlr0040CmpA−1.374.19E-021.621.75E-031.545.19E-03
Slr0041CmpB1.084.69E-012.444.26E-052.201.70E-04
Slr0043CmpC1.242.57E-012.283.25E-042.133.15E-04
Slr0044CmpD−1.038.89E-012.364.82E-051.932.07E-04
Slr1512SbtA−1.459.34E-031.009.60E-01−1.036.94E-01
Slr1513SbtB−2.193.28E-07−1.027.85E-01NANA
 OthersSlr0982RfbB−1.954.63E-03−3.099.96E-06NANA
Sll0064−1.611.88E-02−2.441.68E-02NANA
Slr1216MgtE−1.992.25E-03−2.402.35E-04NANA
Slr0559NatB−1.211.37E-01−1.801.41E-03NANA
Slr1740AppA−1.144.18E-02−1.704.64E-04NANA
Slr0251Ycf85−1.086.79E-01−1.681.73E-02NANA
Sll1927AppF1.471.30E-01−1.642.89E-04NANA
Slr0747GgtANDND−1.563.45E-03NANA
Sll1762−1.501.50E-04−1.531.61E-02NANA
Sll04151.134.00E-01−1.503.41E-02NANA
Slr2131AcrF−1.495.94E-02−1.373.76E-02NANA
Slr0369EnvD−1.151.72E-01−1.361.87E-03NANA
Sll02241.301.20E-01−1.319.42E-03NANA
Sll0575RfbB−1.186.57E-01−1.314.34E-02NANA
Sll1270BgtB1.029.55E-01−1.396.99E-03NANA
Sll0672PacL1.187.37E-021.534.05E-03NANA
Slr1295SufA1.054.86E-011.586.72E-05NANA
Sll1598MntCNDND1.655.79E-04NANA
Sll14811.826.22E-031.802.05E-04NANA
Slr1729KdpB1.078.41E-012.342.02E-03NANA
NDH-1Slr1291NdhD2NDNDNDND4.652.72E-04
Sll1733NdhD32.372.68E-021.191.36E-011.093.34E-01
Sll1735CupS−1.414.12E-04NDND1.071.13E-01
Sll0026NdhF4−1.364.78E-02NDND−1.575.11E-03
Slr1302CupB−1.092.08E-02−1.564.37E-02−1.534.16E-03
Central metabolism/regulation
Sll0745PfkA−1.807.16E-02−1.475.05E-02NANA
Slr0884Gap1−1.753.36E-06−1.491.82E-02−1.431.85E-02
Slr0394Pgk−1.461.22E-03−1.522.58E-03−1.442.09E-04
Sll0587Pyk1−1.472.26E-02−1.523.02E-03−1.423.90E-01
Slr1843Zwf−1.359.93E-05−1.401.47E-03NANA
Slr0452IlvD1.103.18E-011.461.43E-03NANA
Sll1479Pgl−1.272.85E-02−1.468.12E-04NANA
Sll0158GlgB−1.526.74E-06−1.291.45E-02NANA
Sll1502GltBNDND2.325.82E-02NANA
Sll1499GltS−1.082.24E-012.916.35E-02NANA
Slr0710GdhA1.332.82E-041.483.41E-02NANA
Sll1689SigENDNDNDND−1.679.22E-03
Sll1594CcmR1.172.75E-011.382.81E-021.217.95E-02
Ssl0707PII−1.821.22E-04−1.684.15E-03−1.703.13E-05
Ssl0105PipX−1.541.83E-03−1.422.15E-03−1.405.72E-05
Sll08221.157.33E-01−1.499.66E-04−1.359.59E-02
Sll0359−1.336.60E-03−1.359.62E-04−1.343.16E-03
Photosynthesis and respiration
Sll1521Flv11.881.55E-051.602.05E-041.474.94E-04
Sll0550Flv31.443.37E-031.623.87E-031.443.53E-04
Sll1317PetA1.092.40E-011.518.92E-031.337.53E-04
Slr0342PetB1.156.40E-021.661.50E-021.416.61E-03
Sll1316PetC1.083.23E-011.561.84E-04NANA
Slr0343PetD1.142.26E-011.481.03E-021.401.00E-04
Slr1834PsaA1.073.96E-011.351.30E-021.226.46E-03
Slr1835PsaB1.093.89E-011.313.12E-021.203.13E-03
Slr1055ChlH1.416.17E-03NDND2.089.75E-03
Slr1777ChlD1.391.76E-021.486.57E-031.261.11E-03
Sll0247IsiANDND3.801.56E-0218.707.04E-06
sll0813CtaCII1.552.05E-01−1.361.82E-03NANA
Sll1484NdbC−10.511.05E-07−5.071.70E-03−195.604.41E-09
Plasmid encodedSll6053−8.174.50E-05−128.526.57E-06NANA
Sll6054−996.221.74E-06−288.892.12E-06NANA
Sll6055−10.571.18E-07−21.641.36E-06NANA
Slr6012−1.311.54E-03−8.503.25E-06NANA
Slr6013−5.421.38E-07−13.272.44E-06NANA
Slr6014−4.494.61E-04−7.551.65E-05NANA
Slr6015−4.053.77E-04−7.106.50E-05NANA
Slr6016−4.306.29E-06−8.846.05E-05NANA
Sll7062Csm6−2.781.40E-05−5.131.17E-05NANA
Sll7066Cas7−19.766.19E-07−81.873.15E-03NANA
Sll7085Cmr6−2.911.97E-04−4.702.75E-04NANA
Sll7087Cmr4−3.576.95E-08−35.982.23E-04NANA
Sll7090Cmr2−3.087.95E-06−9.432.18E-05NANA