Table II. Top 20 GO terms for biological processes and cellular components ontologies for the genes differentially expressed between day 4 and day 5
Biological ProcessCellular Component
GO IdentifierTermNo. of GenesGO IdentifierTermNo. of Genes
GO:0006412Translation477GO:0009506Plasmodesma621
GO:0001510RNA methylation169GO:0009570Chloroplast stroma503
GO:0046686Response to cadmium374GO:0009535Chloroplast thylakoid membrane246
GO:0051567Histone H3-K9 methylation168GO:0005829Cytosol1,213
GO:0006364rRNA processing222GO:0005886Plasma membrane1,929
GO:0006364Response to salt stress555GO:0022625Cytosolic large ribosomal subunit110
GO:0006098Pentose-phosphate shunt174GO:0022627Cytosolic small ribosomal subunit97
GO:0006275Regulation of DNA replication125GO:0009941Chloroplast envelope422
GO:0042254Ribosome biogenesis327GO:0005774Vacuolar membrane357
GO:0009220Pyrimidine ribonucleotide biosynthesis128GO:0005730Nucleolus234
GO:0009853Photorespiration142GO:0005773Vacuole623
GO:0019288Isopentenyl diphosphate biosynthesis191GO:0048046Apoplast234
GO:0006094Gluconeogenesis147GO:0009507Chloroplast2,385
GO:0006096Glycolytic process182GO:0009543Chloroplast thylakoid lumen64
GO:0008283Cell proliferation190GO:0010287Plastoglobule54
GO:0006270DNA replication initiation65GO:0005618Cell wall381
GO:0010207PSII assembly134GO:0005747Mitochondrial respiratory chain complex50
GO:0009902Chloroplast relocation94GO:0005840Ribosome375
GO:0010389Regulation of G2/M transition66GO:0005794Golgi apparatus599
GO:0010027Thylakoid membrane organization160GO:0022626Cytosolic ribosome268