Table I. Top 20 GO terms for biological processes and cellular components ontologies for the genes differentially expressed between day 0 and day 1
Biological ProcessCellular Component
GO IdentifierTermNo. of GenesGO IdentifierTermNo. of Genes
GO:0006412Translation291GO:0022625Cytosolic large ribosomal subunit100
GO:0001510RNA methylation143GO:0022627Cytosolic small ribosomal subunit83
GO:0006364rRNA processing151GO:0009535Chloroplast thylakoid membrane154
GO:0009220Pyrimidine ribonucleotide biosynthesis95GO:0005730Nucleolus122
GO:0042254Ribosome biogenesis229GO:0009941Chloroplast envelope178
GO:0010207PSII assembly82GO:0009570Chloroplast stroma203
GO:0006098Pentose-phosphate shunt92GO:0048046Apoplast107
GO:0016036Cellular response to phosphate starvation69GO:0009506Plasmodesma199
GO:0010200Response to chitin137GO:0005618Cell wall137
GO:0009657Plastid organization158GO:0022626Cytosolic ribosome219
GO:0006612Protein targeting to membrane127GO:0009522PSI14
GO:0010363Regulation of plant-type hypersensitive response124GO:0009579Thylakoid219
GO:0019288Isopentenyl diphosphate biosynthetic92GO:0010287Plastoglobule28
GO:0019375Galactolipid biosynthetic process52GO:0005840Ribosome267
GO:0009773Photosynthetic electron transport33GO:0009543Chloroplast thylakoid lumen31
GO:0010218Response to far-red light50GO:0030076Light-harvesting complex16
GO:0019344Cys biosynthetic process80GO:0009507Chloroplast770
GO:0009744Response to Suc79GO:0010319Stromule18
GO:0009862Systemic acquired resistance85GO:0030095Chloroplast PSII12
GO:0009637Response to blue light56GO:0005773Vacuole195