Table 3. Candidate gene assessment

The table shows the validation tests on mutants in 23 potential candidate genes for each of the four measures of lesion formation: size, yellowness, greenness, and eccentricity. The number of SNPs classified as significant above the 95th percentile threshold for that trait for that gene is shown as well as the significance of the difference between the insertion mutant and the wild type across all Botrytis isolates (P – Plant) or an interaction with Botrytis isolates (P – Plant:Isolate). Significance was tested using the models mentioned in “Materials and Methods.” Nominal P values between 0.1 and 0.05 are provided if at least one other trait showed significance below 0.05. NS, Not significant.

Arabidopsis Genome Initiative CodeGeneMutantNo. of SNPs in the Coding RegionSizeYellowGreenEccentricity
No. of Unique SNPs above 95P – PlantP – Plant:IsolateNo. of Unique SNPs above 95P – PlantP – Plant:IsolateNo. of Unique SNPs above 95P – PlantP – Plant:IsolateNo. of Unique SNPs above 95P – PlantP – Plant:Isolate
AT2G25540CESA10cesA10-11120.005NS40.053NS2NSNS3NSNS
AT2G39940COI1coi1-140<0.0010.0964<0.001NS0<0.001NS0NSNS
AT1G01060LHYlhy-20220.0060.0932NSNS20.0280.0141NSNS
AT3G26830PAD3pad3-111<0.0010.01400.004NS00.0080.0690NSNS
AT3G52430PAD4pad4-1600.0020.0620NSNS10.0100.0194NSNS
AT4G39350CESA2CS818491830.020NS2NSNS20.067NS00.090NS
AT1G22070TGA3tga3-210NSNS0NSNS0NSNS1NSNS
AT4G17010AT4G17010CS86180473NSNS40.048NS2NSNS10.020NS
AT1G14690MAP65CS872894100NSNS0NS0.0760NSNS0NSNS
AT4G01883CS67496600.083NS0NSNS20.056NS00.043NS
AT4G14420AT4G14420N508498620.046NS1NSNS20.003NS2NSNS
AT4G14400ACD6N559132203NSNS5NSNS150.047NS0NSNS
AT4G14368N574598163NSNS0NSNS6NSNS0NSNS
AT1G31260ZIP10N60458695NSNS3NSNS0NSNS6NSNS
AT4G01860N606172131NSNS0NSNS6NSNS0NSNS
AT2G32150N64006760NSNS0NSNS1NSNS0NSNS
AT4G01880CS857701400.012NS10.037NS10.079NS0NSNS
N608769
AT3G46640LUXlux50NSNS0NSNS4NSNS00.046NS
AT3G45780PHOT1phot163NS0.0521NSNS5NSNS0NSNS
AT4G18130PHYEphyE-2330.002NS00.024NS0NSNS0NSNS
AT4G39030SID1sid190NS0.0140NSNS8NSNS0NSNS
AT5G67370CGLD27N52997140NSNS3NSNS1NSNS0NSNS
AT5G45950N58269251NSNS4NSNS0NSNS0NSNS
AT1G20910N64144350NS0.0230NSNS5NSNS1NSNS
AT5G13550SULTR4;1N66213550NSNS0NSNS0NSNS50.094NS