Table I. Key genes from secondary metabolic pathways that are induced by noble rot in ripe cv Sémillon berries

Functional annotations and gene accessions are provided, in addition to their membership in expression clusters (Fig. 2; Supplemental Table S6).

Functional AnnotationGene AccessionResponse to Noble Rot
Gallic acid biosynthesis
 Shikimate dehydrogenaseVIT_14s0030g00650Cluster 01
Central phenylpropanoid biosynthesis
 Phe ammonia lyase (VvPAL1)VIT_08s0040g01710Cluster 01
 Phe ammonia lyase (VvPAL2)VIT_16s0039g01300Cluster 01
 trans-Cinnamate 4-monooxygenaseVIT_06s0004g08150Cluster 01
 trans-Cinnamate 4-monooxygenaseVIT_11s0065g00350Cluster 01
 trans-Cinnamate 4-monooxygenaseVIT_11s0078g00290Cluster 01
 4-Coumarate-CoA ligaseVIT_02s0025g03660Cluster 01
 4-Coumarate-CoA ligaseVIT_11s0052g01090Cluster 01
 4-Coumarate-CoA ligaseVIT_16s0050g00390Cluster 16
Flavonoid biosynthesis
 Chalcone synthase (VvCHS1)VIT_14s0068g00930Cluster 08
 Chalcone synthase (VvCHS3)VIT_05s0136g00260Cluster 04
 Chalcone isomeraseVIT_13s0067g03820Cluster 03
 Flavonone 3-hydroxylaseVIT_02s0025g02960Cluster 01
 Flavonone 3-hydroxylaseVIT_02s0025g02970Cluster 16
 Flavonone 3-hydroxylaseVIT_04s0023g03370Cluster 01
 Flavonone 3-hydroxylaseVIT_15s0048g02430Cluster 16
 Flavonone 3-hydroxylaseVIT_16s0098g00860Cluster 04
 Dihydroflavonol 4-reductaseVIT_18s0001g12800Cluster 01
Anthocyanin biosynthesis and transport
 UDP-Glc:flavonoid 3-O-glucosyltransferaseVIT_03s0017g02000Cluster 01
 UDP-Glc:flavonoid 3-O-glucosyltransferaseVIT_03s0017g02110Cluster 01
 UDP-Glc:flavonoid 3-O-glucosyltransferaseVIT_03s0017g02120Cluster 01
 UDP-Glc:flavonoid 3-O-glucosyltransferaseVIT_12s0034g00030Cluster 04
 UDP-Glc:flavonoid 3-O-glucosyltransferaseVIT_12s0055g00290Cluster 04
 Glutathione S-transferase (VvGST1)VIT_19s0093g00320Cluster 01
Terpene biosynthesis
 Farnesyl-diphosphate synthase (VvFPPS)VIT_19s0015g01010Cluster 03
 Terpene synthase class A (VvTPS13)VIT_18s0001g05230Cluster 01
 Terpene synthase class A (VvTPS04)VIT_18s0001g04120Cluster 04
 Terpene synthase class A (VvTPS11)VIT_18s0001g04870Cluster 04
 Terpene synthase class A (VvTPS26)VIT_19s0014g04810Cluster 03
 Terpene synthase class B (VvTPS32)VIT_12s0059g02710Cluster 01
 Terpene synthase class B (VvTPS34)VIT_12s0134g00020Cluster 01
 Terpene synthase class C (VvTPS68)VIT_07s0151g01070Cluster 04
 Terpene synthase class G (VvTPS51)VIT_12s0134g00090Cluster 17
Oxylipin biosynthesis
 Lipoxygenase (VvLOXB)VIT_14s0128g00790Cluster 01
 Lipoxygenase (VvLOXC)VIT_14s0128g00780Cluster 01
 Lipoxygenase (VvLOXO)VIT_09s0002g01080Cluster 01
 Lipoxygenase (VvLOXP)VIT_01s0010g02750Cluster 01
 Lipoxygenase (VvLOXK)VIT_13s0064g01490Cluster 16
Volatile thiol biosynthesis
 Glutathione S-transferase (VvGST3)VIT_12s0028g00920Cluster 01
 Glutathione S-transferase (VvGST4)VIT_04s0079g00690Cluster 04
 γ-Glutamyltranspeptidase (VvGGT)VIT_11s0016g02830Cluster 01
 CarboxypeptidaseVIT_00s0285g00070Cluster 04
 CarboxypeptidaseVIT_08s0032g00670Cluster 03