Table II.

Wound-regulated genes involved in putative defense mechanisms

Putative FunctionAccession No.Fold2-a
W0.52-bW6
Pathogenesis-related genes
 Similar to NDR1/HIN1-like protein 3 AAC77866 18.02
 Similar to Hs1pro-1 AAB95285 12.08
 Similar to regulatory protein NPR1 CAA19683 5.07
 Similar to Mlo proteinsAD255524.51
 Putative lectin like protein AAC27148 3.88
 Non-race-specific disease resistance protein (NDR1) AAB95208 3.71
 Similar to Avr9/Cf-9 rapidly elicited protein 137 AAD25764 3.69
 Resistance protein RPP5-like CAA16929 2.47
 Disease resistance protein RPP1-WsC AAC72979 2.13
 Similar to Mlo proteins AAC28997 14.03
 Similar to disease resistance protein Cf-2.2 AAC12833 4.88
 Putative disease resistance protein AAD26901 4.44
 AIG1, disease resistance protein AAC49282 3.66
 Disease resistance RPP5 like protein CAB10461 −3.77
 Putative β-1,3-glucanase AAD15611 3.61
 β-1,3-glucanase-like protein CAA16806 2.12
 Putative β-1,3-glucanase CAA18827 −2.61
 Putative endochitinase AAB64044 16.35
 Class IV chitinase CAA74930 8.42
 Putative endochitinase AAB64049 2.79
 Similar to class I chitinases AAC72865 2.26
 Putative antifungal protein, AFP3_ARATH AAC31244 −2.78−2.15
 Thaumatin-like protein, PR-5 AAF21072 −2.08
 Putative protease inhibitor AAC79626 4.59
 Putative trypsin inhibitor AAB64325 4.13
Oxidative burst
 Peroxidase ATP24a CAA72484 15.41
 Peroxidase ATP15a CAA67551 5.2511.75
 Respiratory burst oxidase protein D AAC39479 4.81
 Putative l-ascorbate oxidase CAA18769 2.71
 CTF2B, similar to monooxygenase 2 AAD09952 2.51
 GA 2-oxidase CAB41008 2.072.31
 Similar to glutathioneS-transferase AAD32888 5.91
 Putative glutathione S-transferase AAC95194 5.45
 Peroxidase ATP2a CAA66863 3.46
 Putativep-hydroxyphenylpyruvate dioxygenase AAF24813 3.33
 Putative glutathioneS-transferase AAC95192 3.28
 Similar to aldehyde reductase AAC62136 3.22
 GlutathioneS-transferase CAA74639 2.72
 Putative amine oxidase AAD22129 2.67
 Putative copper amine oxidase AAD23730 2.23
 Putative ferredoxin AAD15602 2.21
 Putative glutathioneS-transferaseAC951962.11
 Glutathione reductase AAB67841 2.07
 Catalase 3 AAC49807 −3.27
Cytochrome P450
 Putative cytochrome P450 AAC02748 6.31
 Putative cytochrome P450 AAB87109 6.25
 Putative cytochrome P450 AAC06158 4.22
 Cytochrome P450 monooxygenase BAA28534 −2.21
Phenylpropanoid biosynthesis
 Putative leucoanthocyanidin dioxygenase AAC27173 13.66
 Cinnamyl-alcohol dehydrogenase ELI3-2 CAB37539 11.75
 Similar to cinnamyl alcohol dehydrogenase AAC33210 8.89
 Cinnamyl alcohol dehydrogenase-like protein CAA17549 8.31
 Putative cinnamoyl-CoA reductase AAB80681 2.49
 Putative chorismate mutase/prephenate dehydratase AAC73018 −2.13
 Flavonoid 3′,5′-hydroxylase-like protein CAB45977 −6.83
TRP pathway
 Phosphoribosylanthranilate isomerase AAD38141 2.72
 Strictosidine synthase AAB40594 2.67
 TRP synthase α-chain AAC49117 2.11
 Anthranilate synthase, α-subunit AAC35228 2.05
 AnthranilateN-benzoyltransferase-like protein AAB95283 −2.142.01
 Putative chorismate mutase/prephenate dehydratase AAC73018 −2.13
Berberine biosynthesis
 Putative berberine bridge enzyme AAD25759 6.519.25
 Berberine bridge enzyme-like protein CAB42588 2.616.14
 Berberine bridge enzyme-like protein CAB45881 2.323.27
 Tyr transaminase-like protein CAA23026 2.55
 Putative berberine bridge enzyme AAC12821 2.54
 Putative Tyr transaminase AAD23027 2.08
Cell wall modification
 Xyloglucan endotransglycosylase-related protein AAB18367 10.50
 Xyloglucan transglycosylase-related protein (TCH4) AAC05572 4.082.18
 Similar to TCH4 gene AAC27142 4.06
 Similar to xyloglucan fucosyltransferase FT1 AAD22285 3.91
 Glycosyltransferase-like protein CAB62445 2.46
 Putative glucosyltransferase AAC16958 3.13
 Putative glucosyltransferase AAB64024 2.96
 Putative xyloglucan endotransglycosylase AAD31572 2.19
 Similar to pectinesterase AAC19280 3.373.41
 Putative pectin methylesterase AAC02974 3.114.01
 Pectinesterase 1 AAF02857 2.39
 Similar to pectinesterase CAB51210 16.91
 Putative pectinesterase AAB82640 3.35
 Putative pectin methylesterase AAC02973 2.26
 Putative pectate lyase CAA22985 −2.28
 Cellulose synthase isolog AAB63623 4.88
 Cellulose synthase like protein CAB10434 −2.012.23
 UDP-Glc 4-epimerase-like protein CAB45812 11.61
 Putative UDP-galactose-4-epimerase AAD25749 2.182.15
 Extensin-like protein CAA22152 13.41
 Extensin like protein, pEARLI 1 CAB41718 −2.034.74
 pEARLI 1-like protein CAB41717 6.11
 Expansin At-EXP1 AAB38070 −2.16
 Putative expansin AAB87577 −3.29
 Gly-rich protein AAA32722 12.70
 Putative Pro-rich protein AAD29802 2.62
 Gly-rich RNA-binding protein AtGRP2 like CAB36849 −2.44
 Gly-rich protein, atGRP-2 AAB24074 −3.26
  • F2-a  Average channel intensity ratio of wounding-treated samples over control samples from two independent experiments.

  • F2-b  W0.5 and W6 indicate 0.5 and 6 h after wounding.