Table II.

Overlap at 3 h in root for cold, mannitol, and NaCl stress

AnnotationExpression LevelsFold Change at 3 h
Control3 h4°CMannitolNaClProbe Set No.AGI No.
  3 h 27 h  Avg4°CMannitolNaCl
Low-temperature-induced protein 78 2424242,3519321,35698.038.856.52-a 15611_s_atAt5g52310
Unknown 242424601776822.57.428.414097_atAt2g47770
Late embryogenesis abundant (LEA-like) 242424861406703.65.827.919152_atAt5g06760
bZIP transcription factor-like 2430271011592793.75.910.32-a 13965_s_atAt4g34000
Flavin-containing monooxygenase 53726399661763715.89.910.218596_atAt1g62570
CHX17, putative Na+/H+-exchanger 242525921672113.86.88.613627_atAt4g23700
Unknown 444545219903664.92.08.220179_atAt4g38060
Homeobox-Leu zipper protein ATHB-12 3825321441772594.65.68.22-a 16115_s_atAt3g61890
Unknown 62100813003176393.73.97.92-a 20042_s_atAt4g34010
Cold- and ABA-inducible protein kin1 7164225692,6543,9944,1684.77.07.32-a 16474_s_atAt5g15960
Cold-regulated protein COR6.6 (KIN2) 7293995642,6963,8044,1154.86.77.32-a,2-b 18701_s_atAt5g15970
Zinc-binding protein, putative 24242478011317132.54.77.114367_atAt1g60190
β-ketoacyl-CoA synthase, putative 3058441322642883.06.06.518955_atAt1g04220
Unknown 1422331887475991,2264.03.26.52-a 17860_atAt4g27410
Protein phosphatase 2C 4953511381513162.73.06.22-a 18936_atAt1g72770
Protein phosphatase 2C 11476952443425862.63.66.219638_atAt3g11410
Unknown 3472863171,7041,6271,7945.45.15.713645_atAt1g05340
G-box binding bZIP transcription factor 24242465711202.73.05.015214_s_atAt2g48270
Unknown 5735915822,7902,6712,7094.84.64.72-a,2-c 13225_s_atAt1g20440
DNA-binding myb-like protein, putative 7892852052243842.42.64.515871_s_atAt3g24310
Zinc finger protein, putative 27262766541142.52.04.315356_atAt4g23450
Transcriptional activator, CBF1-like 132821073,23927540530.32.63.817520_s_atAt4g25480
Receptor-like kinase, RLK3 6245541671291963.12.43.720144_atAt4g25390
Dehydrin Xero2 6394245323,5141,6481,8356.63.13.519186_s_atAt3g50970
Unknown 7315866594,2141,9232,1836.42.93.32-a 15103_s_atAt1g20450
Unknown 3044493778641,0651,2262.32.83.317384_atAt4g23630
Putative β-galactosidase 242424180185767.57.73.219008_s_atAt2g28470
Nodulin-like 5561584221611797.32.83.113474_atAt2g40900
Unknown 31283010285893.52.93.019368_atAt1g27200
Protein kinase 8067742061802132.82.42.918122_atAt2g30360
CCAAT-box-transcription factor, putative 24242411687664.83.62.820437_atAt5g47640
Protein kinase 2628277870662.92.62.417752_atAt2g32800
Histone H1 5576661981321403.02.02.115695_s_atAt2g18050
Glucosyltransferase, putative 7546612627280.430.450.4618471_atAt2g31790
Unknown 421223322931011480.290.310.4619398_atAt4g37540
Glc-6-phosphate 1-dehydrogenase 2761041904773810.250.380.4319424_atAt1g24280
Terminal flower (TFL1) 9986933230390.350.320.4217029_s_atAt5g03840
Unknown 6549572627240.460.470.4218833_atAt2g03260
Transcription factor ATMYB4 7146592428240.410.480.4116534_s_atAt5g26660
Receptor-like protein kinase 9824612424240.390.390.3916789_atAt1g05700
Auxin transport protein EIR1 2963623291241381260.380.420.3812932_s_atAt5g57090
Unknown1,3945369653812673640.390.280.382-a 19216_atAt2g38310
AnthranilateN-benzoyltransferase-like 2101391755964640.340.370.3714705_i_atAt5g01210
Ribonuclease, putative 29615822710897830.480.430.3719815_atAt1g14210
Asp kinase-homoserine dehydrogenase 10242723424260.470.330.3619749_atAt1g31230
High-affinity nitrate transporter NRT2 256241402444500.170.310.3616615_s_atAt1g08090
Receptor-like protein kinase 10535703126240.440.370.3420219_atAt2g28970
Ca2+-ATPase, AtACA4 2191171687662550.450.370.3318296_atAt2g41560
Fe(II)/ascorbate oxidase 12324742424240.330.330.3314049_atAt4g25310
Unknown 5321643481391091030.400.310.3020636_atAt4g17870
Receptor-like protein kinase 201501265762340.450.490.2712276_atAt2g28960
MYB28-like transcription factor 12259912924240.320.270.272-d 17975_atAt5g61420
1-aminocyclopropane-1-carboxylate oxidase 1841061455166310.350.460.2114039_atAt2g19590
Ferulate-5-hydroxylase (FAH1) 2991052027573420.370.380.2117089_s_atAt4g36220
Peroxidase ATP19a 35446641011163820.270.150.2013610_s_atAt4g11290
Member of lipase/acylhydrolase family1,1771,1441,1615055412010.440.470.1712779_f_atAt1g54000
Receptor-like protein kinase (IRK1) 480167324148107560.460.330.172-a 16818_s_atAt4g21410
Unknown 58145151625580870.490.160.1712791_r_atAt2g45180
Unknown 270901807724240.430.130.132-e 18235_atAt1g27020
Peroxidase, putative 1402371893030240.160.160.1319602_atAt1g49570
Unknown 1752201984231240.210.160.1217440_i_atAt1g78860
Peroxidase ATP12a 791748770297210910.390.270.1217932_s_atAt1g05250
Member of lipase/acylhydrolase family 584874729276272720.380.370.1016493_atAt1g54010
Unknown 87932060026724240.450.040.042-e 20698_s_atAt2g40330
Peroxidase1,5356361,0863966240.040.060.0212400_atAt5g19890
  • F2-a  Shared response in leaves for 12 genes.

  • F2-b  Similar results with probe set #18700_r_at and 18699_i_at.

  • F2-c  Similar results with probe set #15997_s_at.

  • F2-d  Similar results with probe set #18742_f_at.

  • F2-e  Only examples where > 2-fold change persists at 27 h.