Table II.

Predictions of TM spans in Arabidopsis proteins by different programs

TM SpansARAMEMNONTmHMM 2.0HmmTop 2.0SosuiG 1.1Eiconda 0.9TmPredTMapTopPred 2.0
12,0112,9576,1823,3021,7477,5116,3687,344
21,7598451,8811,4411,9774,0512,7683,523
37293109164419661,9851,0831,452
44343364563635601,075574782
5223195287221285481283365
6249211246213235337229282
7184166198159190262193191
8123130100153161151154161
9165140120169160183198194
10220224212177198216175176
11158129118163140196132149
12126134225931411259395
133922774935523239
142823282429401620
1510102791117104
161718351522282312
Total6,4755,85011,1086,9926,85716,71012,33114,789
False pos.2-a 05681491185513561
False neg.2-b 5816033825204810
  • F2-a Number of TM proteins predicted only by this one program.

  • F2-b Number of TM proteins not predicted by this program but by all other programs.