Table III.

Signal sequence prediction programs

ProgramWeb SitePrediction Target3-aReference
TargetP 1.0 http://www.cbs.dtu.dk/services/TargetP/ CHP, MTC, SEC Nielsen et al. (1997a); Emanuelsson et al.  (2000)
ChloroP 1.1 http://www.cbs.dtu.dk/services/ChloroP/ CHP Emanuelsson et al. (1999)
SignalP 2.0 HMM http://www.cbs.dtu.dk/services/SignalP-2.0/ SEC Nielsen and Krogh (1998)
SignalP 2.0 NN http://www.cbs.dtu.dk/services/SignalP-2.0/ SEC Nielsen et al. (1997b)
Predotar 0.5 http://www.inra.fr/predotar/ CHP, MTCI. Small (unpublished data)
MitoProt II http://www.mips.biochem.mpg.de/cgi-bin/proj/  medgen/mitofilter MTC Claros and Vincens (1996)
iPSORT http://www.HypothesisCreator.net/iPSORT/ CHP, MTC, SEC Bannai et al. (2002)
PCLR http://apicoplast.cis.upenn.edu/pclr/ CHP Schein et al. (2001)
  • F3-a CHP, Plastids; MTC, mitochondria; SEC, secretory pathway.