Clock-controlled genes as predicted by enhancer trapping (CCG-ET)
Name | Putative Functiona | Gene Identification | Insb | Exprc | Phased | Microe | CBSf | EEf | G Boxf | HEXf |
---|---|---|---|---|---|---|---|---|---|---|
CCG-ET-1 | Elongation factor 1-α | At1g07930 | O | 200 | 18 | S | 1 (10) | 0 (8) | 0 (0) | 0 (2) |
CCG-ET-2 | STP1, Glc transporter | At1g11260 | O | 2,000 | 8 | S, Hg | 0 (2) | 0 (4) | 1 (4) | 1 (3) |
CCG-ET-3 | SGR2, phospholipase | At1g31480 | P | 200,000 | 6 | S | 0 (10) | 0 (7) | 0 (0) | 0 (1) |
CCG-ET-4 | Glyceraldehyde-3-phosphate dehydrogenase | At1g42970 | G | 2,000 | 6 | H | 0 (11) | 0 (9) | 0 (0) | 0 (0) |
CCG-ET-5 | Hypothetical, transcription factor/F box | At1g50980 | G | 200,000 | 12 | ND | 1 (11) | 1 (3) | 0 (0) | 0 (0) |
CCG-ET-6 | Unknown, MYB, kelch domains | At1g51540 | P | 20,000 | 20 | ND | 1 (6) | 0 (6) | 0 (2) | 0 (2) |
CCG-ET-7 | RBP10-α putative RNA polymerase | At1g53690 | P | 200 | 12 | ND | 1 (6) | 0 (4) | 0 (0) | 0 (1) |
CCG-ET-8 | Putative, GTP-binding protein | At1g60530 | P | 200 | 0 | Hh | 0 (4) | 0 (8) | 0 (0) | 0 (0) |
CCG-ET-9 | Hypothetical protein | At1g73790 | G | 2,000 | 8 | ND | 2 (9) | 0 (10) | 0 (2) | 0 (3) |
CCG-ET-10 | Putative, Ser carboxypeptidase I | At2g22980 | G | 20,000 | 10 | Hh | 0 (6) | 1 (9) | 0 (4) | 0 (0) |
CCG-ET-11 | Putative, MYB domain | At2g26950 | 3 | 2,000 | 3 | Hh | 1 (15) | 1 (11) | 0 (0) | 0 (1) |
CCG-ET-12 | Putative oxysterol binding | At2g31030 | 5 | 2,000 | 6 | ND | 1 (7) | 0 (8) | 0 (0) | 0 (0) |
CCG-ET-13 | AtKUP3, K+ transporter | At3g02050 | G | 2,000 | 0 | S, Hh | 0 (3) | 0 (6) | 0 (0) | 0 (0) |
CCG-ET-14 | unknown protein | At3g10640 | P | 200 | 12 | S | 0 (13) | 1 (5) | 0 (0) | 0 (0) |
CCG-ET-15 | Putative DNA binding | At3g15590 | P | 2,000 | 12 | ND | 1 (9) | 0 (4) | 0 (0) | 0 (0) |
CCG-ET-16 | Putative protein | At3g44410 | P | 2,000 | 12 | S | 0 (1) | 0 (1) | 0 (0) | 0 (1) |
CCG-ET-17 | Expressed protein | At4g14710 | G | 2,000 | 11 | S | 0 (6) | 1 (5) | 0 (0) | 0 (2) |
CCG-ET-18 | Putative, chloroplast DNA binding | At4g21430 | P | 20,000 | 12 | ND | 0 (8) | 0 (8) | 0 (0) | 0 (0) |
CCG-ET-19 | Putative, diacylglycerol kinase iota | At4g30340 | P | 20,000 | 12 | ND | 0 (7) | 0 (6) | 0 (0) | 0 (0) |
CCG-ET-20 | Putative protein | At5g40270 | G | 2,000 | 12 | S | 0 (8) | 0 (5) | 0 (2) | 0 (2) |
CCG-ET-21 | Unknown protein | At5g53710 | O | 20,000 | 11 | ND | 0 (7) | 0 (5) | 0 (0) | 0 (0) |
CCG-ET-22 | AtPME3 like, pectin methylesterase | At5g55590 | P | 2,000 | 0 | ND | 0 (8) | 0 (3) | 0 (0) | 0 (0) |
CCG-ET-23 | Putative, mRNA process (splicing) | At5g56900 | G | 200 | 4 | ND | 0 (7) | 1 (2) | 0 (0) | 0 (1) |
↵a The Arabidopsis Information Resource and the Munich Information Center for Protein Sequences. b T-DNA insertion position in reference to predicted gene location. P, promoter (-2,000/-150); G, exon or intron; 5, 5′-UTR (-150/-1 bp); 3, 3′-UTR; O, other. c Average bioluminescence (photons per second per seedling). d Phase, Time of the peak luciferase activity in continuous conditions normalized to CT. e Micro, Microarray experiments; S, Schaffer et al. (2001); H, Harmer et al. (2000). f CBS (AAAAATCT), EE (AAATATCT), G box (CCACGTGG), and HEX (TGACGTGG); no. of exact matches in predicted promoters (one mismatch). g Rhythmically expressed. h ND, Not determined.