Table I.

Clock-controlled genes as predicted by enhancer trapping (CCG-ET)

Name Putative Functiona Gene Identification Insb Exprc Phased Microe CBSf EEf G Boxf HEXf
CCG-ET-1 Elongation factor 1-α At1g07930 O 200 18 S 1 (10) 0 (8) 0 (0) 0 (2)
CCG-ET-2 STP1, Glc transporter At1g11260 O 2,000 8 S, Hg 0 (2) 0 (4) 1 (4) 1 (3)
CCG-ET-3 SGR2, phospholipase At1g31480 P 200,000 6 S 0 (10) 0 (7) 0 (0) 0 (1)
CCG-ET-4 Glyceraldehyde-3-phosphate dehydrogenase At1g42970 G 2,000 6 H 0 (11) 0 (9) 0 (0) 0 (0)
CCG-ET-5 Hypothetical, transcription factor/F box At1g50980 G 200,000 12 ND 1 (11) 1 (3) 0 (0) 0 (0)
CCG-ET-6 Unknown, MYB, kelch domains At1g51540 P 20,000 20 ND 1 (6) 0 (6) 0 (2) 0 (2)
CCG-ET-7 RBP10-α putative RNA polymerase At1g53690 P 200 12 ND 1 (6) 0 (4) 0 (0) 0 (1)
CCG-ET-8 Putative, GTP-binding protein At1g60530 P 200 0 Hh 0 (4) 0 (8) 0 (0) 0 (0)
CCG-ET-9 Hypothetical protein At1g73790 G 2,000 8 ND 2 (9) 0 (10) 0 (2) 0 (3)
CCG-ET-10 Putative, Ser carboxypeptidase I At2g22980 G 20,000 10 Hh 0 (6) 1 (9) 0 (4) 0 (0)
CCG-ET-11 Putative, MYB domain At2g26950 3 2,000 3 Hh 1 (15) 1 (11) 0 (0) 0 (1)
CCG-ET-12 Putative oxysterol binding At2g31030 5 2,000 6 ND 1 (7) 0 (8) 0 (0) 0 (0)
CCG-ET-13 AtKUP3, K+ transporter At3g02050 G 2,000 0 S, Hh 0 (3) 0 (6) 0 (0) 0 (0)
CCG-ET-14 unknown protein At3g10640 P 200 12 S 0 (13) 1 (5) 0 (0) 0 (0)
CCG-ET-15 Putative DNA binding At3g15590 P 2,000 12 ND 1 (9) 0 (4) 0 (0) 0 (0)
CCG-ET-16 Putative protein At3g44410 P 2,000 12 S 0 (1) 0 (1) 0 (0) 0 (1)
CCG-ET-17 Expressed protein At4g14710 G 2,000 11 S 0 (6) 1 (5) 0 (0) 0 (2)
CCG-ET-18 Putative, chloroplast DNA binding At4g21430 P 20,000 12 ND 0 (8) 0 (8) 0 (0) 0 (0)
CCG-ET-19 Putative, diacylglycerol kinase iota At4g30340 P 20,000 12 ND 0 (7) 0 (6) 0 (0) 0 (0)
CCG-ET-20 Putative protein At5g40270 G 2,000 12 S 0 (8) 0 (5) 0 (2) 0 (2)
CCG-ET-21 Unknown protein At5g53710 O 20,000 11 ND 0 (7) 0 (5) 0 (0) 0 (0)
CCG-ET-22 AtPME3 like, pectin methylesterase At5g55590 P 2,000 0 ND 0 (8) 0 (3) 0 (0) 0 (0)
CCG-ET-23 Putative, mRNA process (splicing) At5g56900 G 200 4 ND 0 (7) 1 (2) 0 (0) 0 (1)
  • a The Arabidopsis Information Resource and the Munich Information Center for Protein Sequences. b T-DNA insertion position in reference to predicted gene location. P, promoter (-2,000/-150); G, exon or intron; 5, 5′-UTR (-150/-1 bp); 3, 3′-UTR; O, other. c Average bioluminescence (photons per second per seedling). d Phase, Time of the peak luciferase activity in continuous conditions normalized to CT. e Micro, Microarray experiments; S, Schaffer et al. (2001); H, Harmer et al. (2000). f CBS (AAAAATCT), EE (AAATATCT), G box (CCACGTGG), and HEX (TGACGTGG); no. of exact matches in predicted promoters (one mismatch). g Rhythmically expressed. h ND, Not determined.