Table II.

SNPs in the coding region between 93-11 and PA64s chloroplast genome

Location in 93-11GeneCodon variationin 91-11/PA64SAmino acid variation in 91-11/PA64S
4,547rsp16ACA/ACC
7,141psbkAAC/AAT
14,166ORF91AGC/AACSer/Asn
27,979rpoC2TTG/TGGLeu/Trp
29,073rpoC2GAC/AACAsp/Asn
35,342atpAGCA/GCG
54,869rbcLGGA/GGG
56,818ORF106GGT/GGC
66,354rpl20CCA /TCAPro/Ser
69,301psbBGTG/GCGVal/Ala
77,750rp116GTA/GCAVal/Ala
79,426rps3GAA/GAG
102,887ndhfGCA/GCG
105,740ORF321TTG/TTA
105,741; 105,742; 105,743ORF321CTT/AGCLeu/Ser
  • The locations of polymorphic sites between chloroplast genomes of 93-11 and PA64S were documented according to the nucleotide order of the 93-11 chloroplast DNA sequence. The oblique line (/) separates the corresponding variations of codons and amino acids in the involved genes between 93-11 and PA64S. Genes were annotated according to the published chloroplast genome (Hiratsuka, et al., 1989). The gene symbols in this table are as follows: ORF, open reading frame; rsp16, ribosomal protein S16; psbk, PSII K protein; rpoC2, RNA polymerase β′-subunit-2; atpA, ATPase α-subunit; rbcL, ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit; rp120, ribosomal protein L20; psbB, PSII 47-kD protein; rp116, ribosomal protein L16; rps3, ribosomal protein S3; and ndhF, NADH dehydrogenase ND5.