Table I.

Selected genes from the initial 700 genes that have similar expression patterns in both of weight-treated and intermediate stems

AGIaGene DescriptionCCbWt/CtcInt/ImmdFnCe
At5g57560Xyloglucan endotransglycosylase (TCH4) protein0.95334.615.9CW
At3g55980Putative protein zinc finger transcription factor (PEI1)0.97626.114.2RT
At5g58120Disease resistance protein RPP1-WsA0.95921.413.7DF
At2g32140Putative disease resistance protein0.98120.37.0DF
At3g50930BCS1 protein-like protein0.97018.710.1EN
At1g09950Similar to Nicotiana tumor-related protein0.97316.026.1RT
At3g09870Similar to auxin-induced proteins0.97614.910.3RT
At2g41100Calmodulin-like protein0.98213.87.0ST
At1g63030Transcription factor DREB1A0.99013.74.3RT
At3g44260CCR4-associated factor 1-like protein0.98812.97.7RT
At4g27280Putative protein centrin0.97112.614.3CC
At5g51190Similarity to ethylene responsive element binding factor0.96210.76.5RT
At1g80820Cinnamoyl CoA reductase0.97410.33.7SM
At1g72520Putative lipoxygenase0.9779.830.0PM
At4g23810AtWRKY53, WRKY-type DNA binding protein0.9549.84.0RT
At2g38470AtWRKY33, WRKY-type DNA binding protein0.9889.47.9RT
At2g17040NAM (no apical meristem)-like protein0.9739.26.1RT
At5g61600DNA binding protein-like, EREBP-40.9798.55.7RT
At3g26210Putative cytochrome P4500.9908.24.8SM
At3g45960Putative protein cim1 induced allergen (At-EXPL3)0.9688.07.1CW
At2g34930Putative disease resistance protein0.9907.63.1DF
At1g72920Similar to virus resistance protein0.9907.23.4DF
At3g50060AtMYB77, R2R3-MYB transcription factor0.9947.13.9RT
At5g37770CALMODULIN-RELATED PROTEIN 2 (TCH2)0.9696.54.8ST
At3g57530Calcium-dependent protein kinase0.9946.25.1ST
At1g18570AtMYB51, R2R3-MYB transcription factor0.9796.111.6RT
At5g37110Putative helicase PIF1 protein0.9846.17.2TN
At4g24380Putative dihydrofolate reductase0.9875.95.6SM
At4g02380Similar to IAA induced protein ARG0.9965.75.4RT
At2g40140Putative CCCH-type zinc finger protein0.9865.75.5RT
At3g52400Syntaxin-like protein0.9835.35.3CO
At4g17500Ethylene responsive element binding factor 10.9975.35.5RT
At2g31880Putative receptor-like protein kinase0.9755.14.3ST
At5g66210Calcium-dependent protein kinase0.9964.84.1ST
At4g02410Putative protein kinase0.9964.86.4ST
At4g08950Putative phi-1-like phosphate-induced protein0.9624.79.1UN
At1g66090Similar to disease resistance protein RPP1-WsA0.9834.63.3DF
At1g63750Similar to disease resistance protein (RPP1-WsC)0.9744.54.7DF
At5g06320Harpin-induced protein-like0.9904.34.2DF
At5g39670Calcium-binding protein-like cbp10.9884.33.8ST
At3g49530NAC2-like protein0.9994.13.7RT
At4g23180Ser/Thr kinase-like protein0.9984.05.4ST
At2g01180Putative phosphatidic acid phosphatase0.9883.93.2PM
At5g41740Disease resistance protein-like0.9923.86.7DF
At3g08860Putative beta-Ala-pyruvate aminotransferase0.9973.73.1PM
At5g47960RAS superfamily GTP-binding protein-like0.9883.54.1ST
At1g52560Chloroplast-localized small heat shock protein0.9833.37.8DF
At4g02200Similar to drought-induced-190.9993.34.0DF
At3g08870Putative Ser/Thr protein kinase0.9983.33.2ST
At3g45640Mitogen-activated protein kinase 30.9973.36.4ST
At5g11650Lysophospholipase homolog LPL10.9843.23.1PM
At4g04540Putative receptor-like protein kinase0.9963.24.7ST
At2g32150Putative hydrolase0.9983.13.0PM
At5g37540Putative protein nucleoid DNA-binding protein cnd410.9743.13.3RT
At2g45220Putative pectinesterase0.9593.17.1CW
At3g59080Putative protein CND410.9963.05.3RT
  • a Arabidopsis Gene Index (AGI) number.

  • b Correlation coefficient calculated by GeneSpring software.

  • c Fold change: signal intensity of 2.5-g weight treated stem over control (immature) stem.

  • d Fold change: signal intensity of intermediate stem over immature stem.

  • e Functional classification using MIPS (http://mips.gsf.de/proj/thal/db/tables/tables_func_frame.html); RT, regulation of transcription; ST, signal transduction; CW, cell wall; DF, defense; CC, cell cycle; PM, primary metabolism; SM, secondary metabolism; EN, energy metabolism; TN; transcription; UN, unclassified.