Table II.

The mature stem up-regulated genes having AuxREs in their promoter region

AGIaGene DescriptionFnCbFoldcAuxin Responsive Cis-ElementsdAuxin Responsee
At4g26220Caffeoyl-CoA O-methyltransferaseSM95.3ARFAT, 2 CATATGGMSAURY (26716, 26717)
At1g32770Similar to OsNAC7RT82.0AUXRETGA1GMGH3ND
At4g02280Putative Suc synthetaseCW43.6CACGCAATGMGH3, CATATGGMSAURND
At4g22680AtMYB85, myb transcription factorRT26.5CACGCAATGMGH3Y (26715, 19775)
At4g12480pEARLI 1CW24.4AUXRETGA1GMGH3, CATATGGMSAURND
At2g43060Similar to transcription factorRT24.1ARFAT, DR5GMGH3 AUXRETGA2GMGH3Y (3749, 6338, 7229)
At1g09970Similar to receptor-like protein kinaseST19.4ARFAT, AUXRETGA1GMGH3N
At4g08300Nodulin-like proteinUN18.6ARFAT, AUXRETGA1GMGH3Y (26716, 3743, 7204, 26715, 19775)
At3g05200Putative RING-H2 zinc finger proteinRT18.4ARFAT, AUXRETGA1GMGH3, CATATGGMSAURY (26715)
At5g17420Cellulose synthase catalytic subunit (IRX3)CW16.2AUXRETGA2GMGH3Y (19775)
At4g12280Copper amine oxidase-likeSM14.0CACGCAATGMGH3, CATATGGMSAURY (3743, 26716, 26717, 19772)
At2g36220Unknown proteinUN13.7AUXRETGA1GMGH3Y (3749, 26715, 26716)
At4g30270Xyloglucan endo-1,4-beta-d-glucanaseCW13.4ARFAT, AUXRETGA1GMGH3Y (27308, 26714, 26716, 26717)
At1g09440Putative ser/thr protein kinaseST10.2AUXRETGA1GMGH3ND
At1g71030Similar to myb-related transcription factorRT5.9AUXREPSIAA4, GGTCCCATGMSAURY (3749, 3743, 26715, 7228)
At2g38860Unknown proteinUN5.4AUXREPSIAA4, CATATGGMSAUR, GGTCCCATGMSAURY (3749, 7229, 7206, 27308)
At2g29450Glutathione S-transferaseSM5.0AUXRETGA1GMGH3, CATATGGMSAURY (7229)
At2g29500Putative small heat shock proteinDF5.0AUXRETGA1GMGH3Y (7229, 26716, 26717, 7228, 26715, 7206)
At1g30640Putative protein kinaseST4.8ARFAT, CATATGGMSAUR, DR5GMGH3ND
At4g37470Putative beta-ketoadipate enol-lactone hydrolaseDF4.7AUXRETGA2GMGH3Y (3743, 3749)
At4g16370isp4 like protein, oligopeptide transporterTF4.4ARFAT, 2 SGBFGMGMAUX28ND
At2g46830MYB-related transcription factor (CCA1)RT4.3AUXRETGA2GMGH3, CATATGGMSAURN
At1g17250Putative receptor protein kinaseDF4.3ARFAT, AUXRETGA1GMGH3ND
At5g42800Dihydroflavonol 4-reductaseSM4.1ARFAT, AUXREPSIAA4Y (26716, 26717, 27308)
At4g04830Similar to transcriptional regulatorRT4.1AUXREPSIAA4, CATATGGMSAURY (26715, 26717)
At3g50770Calmodulin-like proteinST3.9ARFAT, AUXREPSIAA4, CATATGGMSAURND
At1g19670Unknown proteinUN3.5AUXRETGA2GMGH3Y (26716, 26717, 19772)
At2g24180Putative cytochrome P450SM3.4ARFAT, DR5GMGH3N
At4g12020AtWRKY19RT3.42 AUXRETGA1GMGH3ND
At2g15390Unknown proteinUN3.3AUXRETGA2GMGH3, CATATGGMSAURY (3749, 26716, 26717)
At2g35940Putative homeodomain transcription factorRT3.2ARFAT, AUXREPSIAA4Y (7202, 7229, 7206, 6338)
At4g20840Reticuline oxidase-likeSM3.2ARFAT, AUXRETGA2GMGH3Y (3743)
At4g15440Hydroperoxide lyase (HPOL) like proteinPM3.1CACGCAATGMGH3Y (7229, 26715, 26716, 26717, 3743)