Table II.

Useful Web site links to aid the searching with controlled vocabularies

Page NamesURLUsage
TAIR Gene searchhttp://www.arabidopsis.org/servlets/Search?action=new_search&type=geneSearch for genes using controlled vocabularies
TAIR Keyword Browserhttp://www.arabidopsis.org/servlets/Search?action=new_search&type=keywordSearch for or browse controlled vocabulary terms; view term details and term relationships
TAIR GO bulk downloadhttp://www.arabidopsis.org/tools/bulk/go/index.jspDownload GO annotations and functionally categorize a set of genes
TAIR and TIGR GO annotationsftp://ftp.arabidopsis.org/home/tair/Genes/Gene_Ontology/Download GO annotations for the whole Arabidopsis genome
TAIR anatomy and temporal ontologiesftp://ftp.arabidopsis.org/home/tair/Ontologies/Download Arabidopsis anatomy and temporal ontologies
TAIR anatomy annotationsftp://ftp.arabidopsis.org/home/tair/Genes/Gene_Anatomy/Download anatomy annotations for the whole genome
TAIR temporal annotationsftp://ftp.arabidopsis.org/home/tair/Genes/Gene_Developmentalstage/Download temporal annotations for the whole genome
GO consortiumhttp://www.geneontology.org/Gene Ontology Web site
GO database browserhttp://www.godatabase.org/cgi-bin/go.cgiSearch for terms and annotations in the GO database
OBOhttp://obo.sourceforge.net/Open Biological Ontologies Web site, which hosts most of the controlled vocabularies
Plant Ontology consortiumhttp://plantontology.org/Plant Ontology Web site