Table IV.

Unique fields used in TAIR functional annotations

Unique Field NameDescriptionNumber of Annotations
Relationship typeHas23,400
Located in29,701
Involved in29,087
Functions as760
Expressed in857
Related to639
Functions in194
Is subunit of111
Constituent of75
Expressed during60
Required for31
Not involved in31
Regulates23
Not expressed in24
Is down-regulated by20
Expressed only in20
Not functions as6
Not located in6
Represses3
Expressed only during5
Not required for2
None38,067a
Evidence DescriptionYeast two-hybrid assay56
(For IPI evidence code)Coimmunoprecipitation28
Copurification4
Yeast one-hybrid5
Cosedimentation3
Sos-recruitment assay2
Far-western analysis2
Split-ubiquitin assay1
None36,729a
  • a Most of the annotations with none as the relationship type or evidence description are those made by TIGR, who have not implemented these extra fields