Table I.

Strictly D-specific genes encoding CAZymes: a selection of genes that passed both filter I and filter II

Ratios are presented in log2 scale, and log2 ratios >1 are in bold.

GeneaSequenceaESTa13.5 K Arraya3 K ArraybXy versus Phc
ABCDE
PttCesA1FLA064P24U−6.41−5.79−0.301.26−0.58Yes5.66
PttCesA1FLG109P08Y−4.79−4.41−0.181.79−0.70NA5.30
PttCesA3-1FLA040P09U−4.77−4.330.541.75−1.64Yes5.04
PttCesA3-2FLG097P01U−6.02−5.45−0.201.81−0.32NA5.27
PttCesA3-2FLG103P13Y−5.88−5.59−0.321.34−0.29NA5.44
PttCesA9PartialG072P74Y−6.03−5.46−0.082.62−1.07NA6.11
PttCesA9PartialG072P58Y−2.03−1.700.031.480.33NA4.47
PttGT2APartialB005P05U−4.77−4.77−0.592.060.01Yes5.89
PttGT8BFLA065P67U−5.91−5.54−1.322.24−1.99Yes6.51
PttGT8BFLG069P14Y−5.89−5.11−1.282.35−1.90NA6.65
PttGT8CFLA073P75U−4.74−4.900.332.04−1.61Yes5.66
PttGT8DPartialB004P07U−6.69−6.26−1.651.98−0.62Yes6.25
PttGT8DPartialG069P39Y−4.41−4.45−1.482.30−0.58NA5.93
PttGT8EFLG079P18Y−1.39−1.110.231.98−2.19NA2.71
PttGT8EFLUB22CPE03−0.81−1.100.211.95−2.51NA3.19
PttGT8FPartialG069P06Y−2.39−2.07−0.742.36−0.47NA4.98
PttGT31APartialG133P32Y−2.14−1.970.862.02−2.03NA3.10
PttGT43AFLB002P16U−4.31−4.250.331.79−3.59Yes4.69
PttGT43BFLA027P19U−5.05−4.100.371.94−2.32Yes4.76
PttGT47AFLA004P36U−5.16−5.24−0.671.25−2.03Yes5.06
PttGT47AFLA005P12U−4.58−4.75−0.661.60−2.05Yes4.89
PttGT47AFLA012P11U−4.71−4.71−0.791.61−1.89Yes5.26
PttGT47AFLG106P73.3pR−4.06−3.90−0.572.02−1.96NA4.36
PttGT47AFLG072P66.3pR−3.36−2.84−0.382.29−1.42NA1.33
PttGT47CFLA045P41U−4.28−4.03−0.421.95−0.20Yes5.29
PttGT47CFLA018P14U−2.92−2.80−0.281.950.18Yes5.12
PttGT47CFLG099P90Y−1.49−0.950.231.66−0.31NA4.51
PttGT47CFLI042P36P−1.52−1.820.062.390.15NA4.18
PttGT47DPartialG124P64Y−1.10−0.86−0.041.88−1.16NA2.56
PttCel9AFLA064P06U−2.35−1.940.021.490.15Yes2.69
PttXyn10AFLA020P21U−2.53−1.76−0.492.000.60Yes3.43
PttGH17APartialG083P33Y−0.48−0.650.101.55−0.26NA−1.87
PttGH19AFLA044P10U−6.73−6.42−1.150.95−0.37Yes6.60
PttGH19AFLG066P41.5pR−6.27−5.75−1.161.46−0.74NA5.93
PttGH19AFLG063P44.3pR−3.89−3.49−1.131.41−0.63NA4.64
PttGH28APartialA060P67U−1.85−1.87−0.041.550.43Yes3.52
PttBGal35APartialA066P74U0.02−0.20−0.421.71−1.58Yes1.19
PttGH51APartialF025P61Y−1.77−1.80−1.552.62−0.73NA3.49
  • a Several genes are represented by more than one EST on the arrays. FL, Full-length sequence.

  • b Data published in Hertzberg et al. (2001). Yes/no, Gene was/was not up-regulated in the D zone; NA, not available because the EST was not represented on the array.

  • c Expression data for rows 1 to 7 have been published in Djerbi et al. (2004). Xy, Xylem; Ph, phloem.