Table II.

Genes encoding CAZymes highly expressed during secondary cell wall formation: a selection of genes that passed filter I but did not fulfill the requirements of filter II

Ratios are presented in log2 scale, and log2 ratios >1 are in bold.

GeneaSequenceaESTa13.5 K Arraya3 K ArraybXy versus Phc
ABCDE
PttCesA2FLF120P33Y−0.30−0.820.701.160.87NA0.63
PttCesA2FLA020P56U−0.34−0.850.580.940.71No0.63
PttGT8APartialA002P51.3pR−3.44−1.280.221.751.07Yes3.75
PttGT8APartialA002P78U−3.46−1.38−0.011.420.91Yes3.53
PttGT8GPartialA068P23U−0.350.040.481.08−1.39No1.22
PttGT8GPartialF056P93Y−0.190.300.710.82−0.63NA0.41
PttGT8HPartialG091P40Y−1.02−0.65−0.041.041.84NA2.34
PttGT14AFLA002P61U−1.89−1.910.671.600.34Yes3.91
PttGT14BFLB005P04U−2.75−1.150.921.34−1.64Yes2.57
PttGT31BPartialG108P23Y−1.59−1.100.621.510.20NA2.15
PttGT47BFLA006P34U−1.51−1.23−0.261.95−0.33Yes3.25
PttGT61APartialG123P20Y−0.410.140.851.020.29NA0.64
PttGT61APartialA020P80U−0.530.140.690.800.03No0.59
PttXET16LPartialUB27CPD070.00−0.530.021.421.10NA−0.11
PttBGal35BPartialG079P88Y−3.55−3.720.691.230.94NA3.34
PttBGal35BPartialG107P47Y−3.48−4.200.751.241.07NA3.16
  • a Several genes are represented by more than one EST on the arrays.

  • b Data published in Hertzberg et al. (2001). Yes/no, Gene was/was not up-regulated in the D zone; NA, not available because the EST was not represented on the array.

  • c Expression data for rows 1 and 2 have been published in Djerbi et al. (2004). Xy, Xylem; Ph, phloem.