Table I.

Predicted genes in the BAC clone 56B23

Le, Tomato; Ns, Nicotiana sylvestris; St, potato; id., nucleotide identity.

Gene NamePredicted FunctionStrand and PositionsExon No.BLASTN EST Best HitBLASTX Best Hit
bp
56B23_g1a,bPutative protein(+) 831–1,2222Le, AI484069, E = e−122 95% id.NP_915349 (rice) hypothetical protein, E = e−36
56B23_g2Putative protein Kinase(−) 35,141–37,4933St, CK256320, E = 0, 94.6% id.NP_191154 (Arabidopsis) protein kinase E = e−107
56B23_g3Fer proteinc(−) 50,573–52,2224Le, BF098042, E = 0, 100% id.AAN39037 (tomato) bHLH transcriptional regulator E = e−150
56B23_g4d1,4-Benzoquinone reductase(+) 66,102–66,2361Ns, BP748895, E = e−30, 88.1% id.T05751 (Arabidopsis) hypothetical protein E = e−12
56B23_g5Putative protein(−) 71,693–88,5968Le, AI485185, E = 0, 99.2% id.BAB09660 (Arabidopsis) unnamed protein product E = 0
56B23_g6aPutative ethylene receptor(+) 156,222–156,7221Le, CK715332, E = 0, 91.2% id.$AAF20093 (tobacco) putative ethylene receptor E = e−65
56B23_g7Putative phospholipase C(−) 163,090–169,7459Le, BI931651, E = 0, 98.4% id.CAA63893 (potato) phospholipase C E = 0
56B23_g8Putative phospholipase C(−) 170,773–173,8739Le, BF096534, E = 0, 98.5% id.CAA65127 (Nicotiana rustica) phospholipase C E = 0
56B23_g9Putative cyclophilin(+) 183,488–187,7888Le, BI931759, E = 0, 99.6% id.NP_567029 (Arabidopsis) putative cyclophilin E = e−69
56B23_g10Putative protein(−) 188,283–188,6451Le, BG130993, E = 0, 100% id.AAQ73526 (Mesembryanthemum crystallinum) EARLY flowering 4 E = e−23
  • a Indicates that transcript of the gene was detected by RT-PCR.

  • b Partial gene.

  • c Ling et al. (2002).

  • d Pseudogene.