Table II.

Nonredundant number of proteins identified in each experimental set to be present in different subcellular locations and the confirmation of locations by independent techniques

FP, Fluorescent protein-derived set; MS, mass spectrometry proteomics-derived set; SP, Swiss-Prot database-derived set; Any One, nonredundant set of proteins with at least one piece of data across all three experimental data types. Two-way (MS-FP, MS-SP, FP-SP) and three-way (MS-FP-SP) cross-over sets where data are present for individual proteins from multiple experimental sets are also shown.

CompartmentMSFPSPAny OneMS-FPMS-SPFP-SPAll Three
Mitochondria547732277261699115
Plastid1,0171183231,24023173308
Nucleus3673205511,1007518505
PM53484117670194475
Vacuole37843424241617137
Peroxisome284711771620
Golgi274110
ER39433
Cytosol15424812
Extracellular182144
Cytoskeleton2420
Cell plate1060
Unclear101238