Table VI.

Data obtained from SUBA for the subcellular location of a protein kinase family (TIGR gene paralog family 2697)

A set of 30 pieces of experimental location data (noted as black boxes) from 14 published reports is shown compared to the predictions from a set of six different targeting programs. No Swiss-Prot data were available for location of this family of proteins. Description abbreviations: CDK, cyclin-dependent kinase; MAPK, MAP kinase; MAPKK, MAP kinase kinase; PK, protein kinase; PP, putative protein. FP, Fluorescent protein-derived set; MS, mass spectrometry proteomics-derived set. cpt, Plastid; mito, mitochondrion; perox, peroxisome; nuc, nucleus; sec, secretory pathway; signal, signal sequence; excel, extracellular; cyto, cytosol; ER, endoplasmic reticulum; cytoskel, cytoskeleton; vac, vacuole. *, Experimental data available through www.suba.bcs.uwa.edu.au.

GeneESTDescriptionPrediction ProgramsFP DataMS Data
iPSORTMITOProt IIMITOPREDPeroxiPPredotarSubLocTargetPWoLF PSORTcptmitonucERcytoskelcytosolunclearcptmitonucperoxPMvac
At1g180409CDK D1;3mitocpt*
At1g5166013MAPKK 4cptmitonuccptcpt***
At1g5316510MAPK BnMAP4K αnucnuc*
At1g667503CDK D1;2mitomitocyto**
At1g692203Ser/Thr kinasenucnuc*
At1g736902CDK D1;1mitocyto*
At2g175206PKsignalERmitosecPM**
At2g4801010PKsignalERnucsecPM*
At3g079802MAP3K ε PKnuc*
At3g152205MAPKnucnuc*
At3g252502PKnucnuc*
At3g267002PKsignalERcytosecvac*
At3g275601PK, ATN1mitocyto*
At3g4461010PKnuccptnuc*
At3g464100PPnuccyto*
At4g2981012MAPKK 2mitomitocyto*
At4g328302Ser/Thr PKperoxmitocyto*
At5g132904PK precursormitomitomitoexcelmitocpt*
At5g209303PK (tousled)nuccptnuc***
At5g243603PPsignalERcytosecPM**
At5g254401PKperoxcytocyto**
At5g667100PK (ATN1-like)mitomitomitonuc*