Table II.

Microarray data for selected genes induced by salinity stress in salt-tolerant genotype FL478

Organism is the source of BLAST match for putative function annotation with E value shown. P value is the statistical significance of the differential expression for the probe set. Only selected probe sets with putative functions are listed. A complete list of genes responsive to salt stress in FL478 is provided (see supplemental data).

Putative FunctionProbe Set IDOrganismE ValueP Value
Transport
    Cyclic nucleotide-regulated ion channelOsAffx.23819.2.S1_x_atRice1e-600.034
    Ankyrin repeat family proteinOs.49213.2.S1_atRice1e-440.038
    Glutamate receptor family proteinOsAffx.30030.2.S1_atRice1e-230.003
    Sodium transporter (HKT1)Os.30563.1.S1_atRice3e-190.001
    ABC transporter family proteinOsAffx.2938.1.S1_atRice8e-180.048
    MATE efflux family proteinOsAffx.15672.1.S1_atArabidopsis6e-700.031
Abiotic stress
    Protein phosphatase 2COs.18261.1.S1_atRice2e-620.045
    Protein peroxidase prx12 precursorOs.47625.1.A1_s_atRice4e-070.010
    d-Man-binding lectinOs.26941.1.A1_atRice3e-440.000
    WSI76 proteinOs.2677.1.S1_atRice3e-420.008
    Diacylglycerol kinase accessoryOsAffx.29212.1.S1_atRice4e-590.006
    Dehydration-responsive protein (RD22)Os.28427.1.S2_a_atArabidopsis3e-120.002
    Late-embryogenesis abundant proteinOs.55959.1.S1_atArabidopsis2e-100.002
    Universal stress protein (USP) familyOs.55070.1.S1_atArabidopsis6e-060.016
    Dehydrin xero2 (XERO2)Os.12633.1.S1_s_atArabidopsis4e-050.015
Other genes
    Avr9/Cf-9 rapidly elicited proteinOsAffx.30030.2.S1_atRice1e-1000.002
    CC-NBS-LRR resistance protein mla13OsAffx.31356.1.S1_atRice4e-330.004
    Ser/Thr kinase-like proteinOsAffx.28531.1.S1_atRice1e-990.042
    DNA cytosine methyltransferase Zmet3OsAffx.24938.1.S1_atRice2e-860.006
    Cytochrome P450 monooxygenaseOsAffx.12860.1.S1_atRice3e-700.024
    Iron-sulfur cluster-binding proteinOsAffx.25764.2.S1_atRice2e-680.012
    Lipid transfer proteinOs.6274.1.S1_atRice7e-510.012
    MADS-box protein-likeOsAffx.7652.1.S1_atRice3e-260.000
    FAR1 domain proteinOsAffx.27871.1.S1_atRice3e-230.001
    β-1,3-glucanaseOs.51679.1.S1_atRice7e-110.047
    V-type ATPase 116-kD subunitOs.56862.1.S1_atSolanum demissum5e-060.049
    Calcineurin-like phosphoesteraseOsAffx.17017.1.S1_atArabidopsis7e-130.001
    F-box family proteinOsAffx.20772.1.S1_atArabidopsis9e-120.022
    AGP19Os.57128.1.S1_atArabidopsis1e-070.0005
    LOB domain proteinOs.10351.5.S1_x_atArabidopsis5e-0060.014