Microarray data for selected genes induced by salinity stress in salt-tolerant genotype FL478
Organism is the source of BLAST match for putative function annotation with E value shown. P value is the statistical significance of the differential expression for the probe set. Only selected probe sets with putative functions are listed. A complete list of genes responsive to salt stress in FL478 is provided (see supplemental data).
| Putative Function | Probe Set ID | Organism | E Value | P Value |
|---|---|---|---|---|
| Transport | ||||
| Cyclic nucleotide-regulated ion channel | OsAffx.23819.2.S1_x_at | Rice | 1e-60 | 0.034 |
| Ankyrin repeat family protein | Os.49213.2.S1_at | Rice | 1e-44 | 0.038 |
| Glutamate receptor family protein | OsAffx.30030.2.S1_at | Rice | 1e-23 | 0.003 |
| Sodium transporter (HKT1) | Os.30563.1.S1_at | Rice | 3e-19 | 0.001 |
| ABC transporter family protein | OsAffx.2938.1.S1_at | Rice | 8e-18 | 0.048 |
| MATE efflux family protein | OsAffx.15672.1.S1_at | Arabidopsis | 6e-70 | 0.031 |
| Abiotic stress | ||||
| Protein phosphatase 2C | Os.18261.1.S1_at | Rice | 2e-62 | 0.045 |
| Protein peroxidase prx12 precursor | Os.47625.1.A1_s_at | Rice | 4e-07 | 0.010 |
| d-Man-binding lectin | Os.26941.1.A1_at | Rice | 3e-44 | 0.000 |
| WSI76 protein | Os.2677.1.S1_at | Rice | 3e-42 | 0.008 |
| Diacylglycerol kinase accessory | OsAffx.29212.1.S1_at | Rice | 4e-59 | 0.006 |
| Dehydration-responsive protein (RD22) | Os.28427.1.S2_a_at | Arabidopsis | 3e-12 | 0.002 |
| Late-embryogenesis abundant protein | Os.55959.1.S1_at | Arabidopsis | 2e-10 | 0.002 |
| Universal stress protein (USP) family | Os.55070.1.S1_at | Arabidopsis | 6e-06 | 0.016 |
| Dehydrin xero2 (XERO2) | Os.12633.1.S1_s_at | Arabidopsis | 4e-05 | 0.015 |
| Other genes | ||||
| Avr9/Cf-9 rapidly elicited protein | OsAffx.30030.2.S1_at | Rice | 1e-100 | 0.002 |
| CC-NBS-LRR resistance protein mla13 | OsAffx.31356.1.S1_at | Rice | 4e-33 | 0.004 |
| Ser/Thr kinase-like protein | OsAffx.28531.1.S1_at | Rice | 1e-99 | 0.042 |
| DNA cytosine methyltransferase Zmet3 | OsAffx.24938.1.S1_at | Rice | 2e-86 | 0.006 |
| Cytochrome P450 monooxygenase | OsAffx.12860.1.S1_at | Rice | 3e-70 | 0.024 |
| Iron-sulfur cluster-binding protein | OsAffx.25764.2.S1_at | Rice | 2e-68 | 0.012 |
| Lipid transfer protein | Os.6274.1.S1_at | Rice | 7e-51 | 0.012 |
| MADS-box protein-like | OsAffx.7652.1.S1_at | Rice | 3e-26 | 0.000 |
| FAR1 domain protein | OsAffx.27871.1.S1_at | Rice | 3e-23 | 0.001 |
| β-1,3-glucanase | Os.51679.1.S1_at | Rice | 7e-11 | 0.047 |
| V-type ATPase 116-kD subunit | Os.56862.1.S1_at | Solanum demissum | 5e-06 | 0.049 |
| Calcineurin-like phosphoesterase | OsAffx.17017.1.S1_at | Arabidopsis | 7e-13 | 0.001 |
| F-box family protein | OsAffx.20772.1.S1_at | Arabidopsis | 9e-12 | 0.022 |
| AGP19 | Os.57128.1.S1_at | Arabidopsis | 1e-07 | 0.0005 |
| LOB domain protein | Os.10351.5.S1_x_at | Arabidopsis | 5e-006 | 0.014 |