Table IV.

Plant specificity of SAGs

Up, Up-regulated; Down, down-regulated.

CategoryPSa TotalPS SENb UpPS NSc UpPS SEN DownPS NS DownAOd TotalAO SEN UpAO NS UpAO SEN DownAO NS Down
All genese2,996/14%392/1.8%326/1.5%316/1.5%285/1.3%2,391/11%318/1.5%273/1.3%235/1.1%188/0.9%
TMf191/10%22/1.1%21/1.1%18/0.9%17/0.9%297/15%62/3.2%54/2.8%26/1.3%22/1.1%
TFg638/32%104/5.2%91/4.6%48/2.4%42/2.1%32/1.6%2/0.1%2/0.1%2/0.1%2/0.1%
Kh00000252/67%46/12%42/11%7/1.9%4/1.1%
RLKi1/0.1%0000386/63%65/11%63/10%31/5.1%23/3.8%
  • a PS, Arabidopsis genes with similar protein sequences found only in other plants.

  • b SEN, Genes that are regulated during NS, DIS, or DET.

  • c NS, Genes that are regulated during NS.

  • d AO, Arabidopsis genes with similar protein sequences in bacteria, archae, cyanobacteria, and eukaryotes.

  • e All genes, All genes on the Agilent Arabidopsis 2 microarray. Given is the number of genes in the respective category. Percentages relate to the total 21,500 genes on the microarray.

  • f TM, TPs and other membrane proteins with ≥3 TM spans. Given is the number of TM genes in the respective category. Percentages relate to the 1,931 TM genes on the microarray.

  • g TF, Putative TFs. Given is the number of TF genes in the respective category. Percentages relate to the 1,985 TF genes on the microarray.

  • h K, Putative kinases. Given is the number of K genes in the respective category. Percentages relate to the 376 K genes on the microarray.

  • i RLK, Putative RLKs. Given is the number of RLK genes in the respective category. Percentages relate to the 610 RLK genes on the microarray.