Sequence comparison of proteins participating in phosphoglycolate turnover with candidate proteins from Synechocystis using PSI- and PHI-BLAST (Altschul et al., 1997)
The similar proteins from bacteria or Arabidopsis are in most cases biochemical characterized.
| Protein (Abbreviation) | Organism | Accession No. | Literature | Similarity e Value | ORF in Synechocystis |
|---|---|---|---|---|---|
| Phosphoglycolate phosphatase (PGP) | A. eutrophus | P40852 | Schäferjohann et al. (1993) | 3e−08 | slr0458 |
| 9e−06 | sll1349 | ||||
| Glycolate dehydrogenase subunit D (GlcD) | E. coli | AAC76015 | Pellicer et al. (1996) | 3e−126 | sll0404 |
| Ala:glyoxylate aminotransferase (AGT) | Arabidopsis | At2g13360 | Liepman and Olsen (2001) | 3e−59 | sll1559 |
| GDC, P protein (GcvP) | Arabidopsis | At2g26080 | H. Bauwe (unpublished data) | 0 | slr0293 |
| GDC, T protein (GcvT) | Arabidopsis | At1g11860 | H. Bauwe (unpublished data) | 7e−52 | sll0171 |
| GDC, H protein (GcvH) | Arabidopsis | At2g35120 | H. Bauwe (unpublished data) | 2e−28 | slr0879 |
| GDC, L protein (GcvL) | Arabidopsis | At3g16950 | H. Bauwe (unpublished data) | 1e−164 | slr1096 |
| Ser hydroxymethyltransferase (SHMT) | Arabidopsis | At4g37930 | Voll et al. (2006) | 6e−94 | sll1931 |
| Hydroxypyruvate reductase (HPR) | Arabidopsis | At1g68010 | H. Bauwe (unpublished data) | 2e−28 | sll1908 |
| 2e−26 | slr1556 | ||||
| Glycerate kinase (GLYK) | E. coli | AAB93855 | Cusa et al. (1999) | 3e−64 | slr1840 |
| Glyoxylate carboligase (GCL) | E. coli | AAA23864 | Chang et al. (1993) | 1e−94 | slr2088 |
| 3e−58 | sll1981 | ||||
| Tartronic semialdehyde reductase (TSR) | E. coli | P77161 | Cusa et al. (1999) | 3e−35 | slr0229 |