Table V.

Occurrence of P1BS and E2F in differentially expressed genes showing interaction between the two factors Suc and P starvation

Differentially expressed genes were divided into three clusters as described in Figure 6 and 1,000-bp upstream regions for each were analyzed for the occurrence of the motifs. The frequency in the 1,000-bp upstream regions was analyzed for the whole genome using the Patmatch tool at TAIR (http://www.arabidopsis.org/index.jsp) choosing single + strand (Watson).

GenesNo. Genes in ClusterPHR1 Binding Site, P1BS (GNATATNC)E2F Binding Site (TTTCCCGC)Core of E2F Binding Site (TCCCGC)
Genes with MotifMotifs% Genes with MotifGenes with MotifMotifs% Genes with MotifGenes with MotifMotifs% Genes with Motif
Cluster 1658912.371610.8112416.9
Cluster 236101327.8000112.8
Cluster 347202842.6000112.2
Genome18.11.15.0