Table III.

Genes differentially expressed in leaf and orange fruit of P_35S:Slgalldh^RNAi line 8 versus control plants

SGN^a	Description	P Value^b	Ratio^c
Leaf
Group I: Stress
U212549	Glu decarboxylase	0.008	2.4
U212565	Ripening-associated membrane protein	0.013	1.7
U212578	Alcoholacyltransferase	0.009	−1.6
U212870	Polyphenol oxidase chloroplastic	0.010	1.6
U212989	TSI-1 protein	0.016	1.7
U213021	Wound-induced proteinase inhibitor	0.013	1.6
U212874	Wound-induced proteinase inhibitor	0.008	2.3
U212973	Metallothionein-like protein	0.017	1.6
U213190	Cold-induced glucosyltransferase	0.015	1.7
U213588	Protease inhibitor	0.010	2.1
U213613	Ethylene-responsive proteinase inhibitor	0.012	1.9
U214777	Pro-rich protein	0.010	2.3
U216788	Pro synthetase associated protein	0.008	2.5
U215124	Ultraviolet-B repressible protein	0.014	1.6
U224685	Glucan-1,3-β-glucosidase	0.010	2.1
U226439	UDP-glucuronosyl transferase	0.013	1.7
U218272	Ser protease	0.017	1.8
U214067	Geranylgeranyl reductase	0.008	1.8
Group II: Photosynthesis; Carbon and Cell Wall Metabolism
U212564	Plastidic aldolase	0.011	1.7
U212700	Plastidic aldolase	0.011	1.8
U212863	Chlorophyll a/b-binding protein precursor	0.011	1.6
U212865	Chlorophyll a/b-binding protein precursor	0.008	2.3
U212939	Rubisco activase	0.009	1.9
U212940	Rubisco activase	0.014	1.8
U212941	Rubisco activase	0.010	2.3
U213031	Plastocyanin chloroplast precursor	0.014	1.9
U213044	Xyloglucane endotransglucosylase	0.009	1.9
U213080	Carbonic anhydrase precursor	0.012	1.7
U213214	PSII core complex proteins	0.011	1.8
U213287	PSII core complex proteins	0.010	1.9
U213381	PSI reaction center subunit	0.012	1.9
U213390	PSI reaction center subunit	0.011	1.7
U213493	Pectine esterase	0.008	1.7
U213559	Pectine esterase	0.010	1.7
U214487	Extensin	0.011	1.6
U216405	Xyloglucane endotransglycosylase	0.014	1.7
U216855	Thioredoxin	0.008	−1.6
U220664	Glycerol-3-P acyltransferase	0.008	1.9
U225515	Glyceraldehyde-3-P dehydrogenase	0.011	1.8
Group III: Signal Transduction and Hormones
U212854	Calmodulin	0.009	1.6
U214384	Apetala2-like protein	0.015	1.6
U214458	RNA-binding protein	0.011	1.7
U220213	MADS-box protein TDR3	0.011	1.9
U221524	Ser/Thr protein kinase	0.010	2.0
U222333	Ethylene response binding protein	0.011	1.6
U223492	F-box protein	0.017	−2.1
U225548	PP2C	0.011	1.7
U213123	Arg decarboxylase	0.011	1.6
U215755	Auxin-binding protein	0.012	2.3
Group IV: Miscellaneous
U213050	Glycolate oxidase	0.010	1.8
U213604	Inorganic pyrophosphatase	0.014	1.7
U213912	Aminomethyltransferase	0.010	1.8
U214617	Acetyl-CoA C-acyltransferase	0.013	1.9
U215017	Sterol C-methyl transferase	0.010	1.7
U216066	Vacuolar ATP-synthase subunit	0.010	1.8
U216256	Cytochrome c oxidase	0.012	1.6
U216323	Translation initiation factor	0.011	1.6
U216736	Ca2+-ATPase	0.015	1.6
U216923	Lipid transfer protein	0.010	1.7
U217914	Metal-transporting P-type ATPase	0.012	1.8
U217993	Adaptin	0.012	1.6
U218299	Ribosomal protein	0.011	1.6
U218653	Sterol C-methyl transferase	0.011	1.6
U240467	Developmental protein related	0.008	1.8
Orange Fruit
Group I: Stress
U212932	Heat shock protein	0.012	2.1
U213790	Acidic endochitinase	0.011	1.9
U216459	Gly-rich protein	0.012	2.0
U216468	Cytosolic heat shock protein	0.011	4.2
U218323	Heat shock protein	0.011	2.6
U214174	Coumarate-CoA ligase	0.012	2.2
Group II: Photosynthesis; Carbon and Cell Wall Metabolism
U213287	PSII	0.013	2.9
U213624	Pyruvate decarboxylase	0.012	2.3
U216001	Extensin class I	0.016	1.6
U216086	Carbohydrate kinase	0.014	2.5
U225512	Rubisco	0.011	2.1
U225539	Glc-1-P adenylyl transferase	0.016	1.7
Group III: Signal Transduction and Hormones
U213126	Calreticulin	0.018	1.6
U214610	WRKY protein	0.012	−1.6
U215004	AGAMOUS protein	0.011	1.6
U216554	Hydroxysteroid dehydrogenase	0.018	2.3
U216991	Ser/Thr protein kinase	0.011	2.0
U217359	MBF1	0.013	4.5
U219135	Ethylene responsive factor JERF2	0.018	1.6
U219631	GA 20-oxidase	0.017	1.9
U229641	Ethylene-receptor 2 ETR2	0.016	1.6
U221533	PP2C	0.011	1.8
U223066	AP2/ERF-type protein	0.018	−1.8
U225322	Ser/Thr protein kinase	0.016	1.7
Group IV: Miscellaneous
U213332	Peptidyl prolyl isomerase	0.017	2.0
U216689	Threonyl-tRNA synthetase	0.019	1.8
U217998	Metal transporter	0.011	1.8
U219908	Ripening regulated protein DDTFR8	0.013	4.5

↵a SGN tomato unigenes identification number of cDNA spotted on TOM1 microarray (http://www.sgn.cornell.edu/search/direct_search.pl?search=unigene).
↵b Probability of the t test.
↵c Mean ratio of the normalized data between P_35S:Slgalldh^RNAi line 8 and control plants.