Table II.

GO enrichment for the 10 most frequent cis-elements enriched in ATH95 gene coexpression neighborhoodsa

MotifNo. of GenesKnown MotifGO CategoryEnrichment
GO LabelGO DescriptionP ValueFoldb
AAACCCTA2,524TELOGO:0042254Ribosome biogenesis and assembly5.84E-537.67 (3.85)
CTTATCCN1,794IboxGO:0015979Photosynthesis2.18E-8711.88 (3.15)
GGCCCANN1,601UP1GO:0042254Ribosome biogenesis and assembly6.08E-6811.93 (2.68)
GCCACGTN1,475GboxGO:0015979Photosynthesis1.95E-8613.55 (n.e.)
GCGGGAAN1,303E2FGO:0006260DNA replication8.89E-268.80 (9.40)
GACCGTTN930MSAGO:0007018Microtubule-based movement9.83E-129.82 (n.e.)
AANGTCAA389WboxGO:0050832Defense response to fungi6.22E-0813.00 (1.50)
CNGATCNA382AGMOTIFNTMYB2GO:0048193Golgi vesicle transport1.22E-0817.60 (n.e.)
NCGTGTCN328ABA-responsive elementGO:0009737Response to ABA stimulus1.04E-076.84 (2.00)
CATGCANN284RYREPEATBNNAPAGO:0048316Lipid transport9.99E-048.10 (1.84)
  • a Similar motifs with the same GO enrichment trends are not shown.

  • b Enrichment values considering all motif matches on Arabidopsis promoters (i.e. both conserved and nonconserved) are shown in parentheses. n.e., No enrichment.