Table I.

Distribution of Illumina-Solexa 36-bp reads according to their alignment against soybean and B. japonicum genomes

SampleSoybean UniqueSoybean NonuniqueSoybean RepetitiveUnalignedTotal Reads
12-HAI inoculated root hair2,397,650662,76923,7271,798,1894,882,335
12-HAI mock-inoculated root hair2,828,246719,62638,9012,024,7365,611,509
24-HAI inoculated root hair3,527,919855,96222,7411,787,8476,194,469
24-HAI mock-inoculated root hair3,612,912988,55825,9732,199,5296,826,972
48-HAI inoculated root hair3,219,116821,61714,8481,788,9045,844,485
48-HAI mock-inoculated root hair4,086,9651,052,45728,3141,670,4736,838,209
48-HAI stripped root3,855,7511,006,81322,7861,767,9046,653,254