Table I. S. pennellii BAC and cosmid clones anchored onto five genomic regions spanning fruit quantitative metabolic loci (QML) and yield-associated loci (YAL)

Metabolite QTLs and YALs listed here were previously reported by Eshed and Zamir (1995), Liu et al. (2003), Schauer et al. (2006), Semel et al. (2006), and Tieman et al. (2006).

Genomic Region (BIN)No. of MarkersSeed ClonesClones Anchored by Individual HybridizationAverage Clone No. per MarkerAverage Clone No. per cMNo. of End SequencesNo. of ContigsTotal Length of Nonredundant End SequencesClones with Confirmed Position by End SequencingClones with Single Map PositionsAssociated QML/YAL
bp
1C (19.4 cM)19323 (for 1C and 2B)492.62.578751,37219813a
2B (13.0 cM)251325.310.11732191,196512310b/5c
4I (11.7 cM)1981552.84.771643,361312137d/10e
7H (36.0 cM)18100683.81.81051365,20041317f/2g
11C (19.0 cM)23110703.03.792760,966191712h/8i
Total10461437451954312,095161100104
Average3.54.6
  • a Ala, Asp, Cys, Met, oxoproline-5, S-methyl-Cys, isomaltose, phosphate, Glc-6-P, sorbitol, quinate, succinate, threonate.

  • b Glu, S-methyl-Cys, Fru, Gal, Glc, Man, glycerol-3-phosphate, dehydroascorbate, gluconate, isocitrate.

  • c Flowers per plant, pericarp, seed number per fruit, seed number per plant, leaf morphology.

  • d Asn, Asp, β-Ala, γ-aminobutyric acid, Glu, Gln, Ile, Leu, Lys, Met, Pro, Fru, Fuc, Glc, Suc, phosphate, Fru-6-P, Glc-6-P, glycerol-3-phosphate, inositol-1-phosphate, stearate, palmitate, citrate, dehydroascorbate, gluconate, glycerate, isocitrate, 3-methylbutanal, 3-methylbutanol, 2-methylbutanal, 2-methylbutanol, isovaleronitrile, isobutyl acetate, pentanal, trans-2-pentenal, 1-penten-3-one, cis-2-penten-1-ol.

  • e Plant weight, Brix, fruit color, fruit length per width, fruit width, harvest index, pericarp, seed width, style length, green fruit at harvest time.

  • f γ-Aminobutyric acid, homoserine, Ile, Leu, Met, Ser, Glc-6-P.

  • g Fruit length, fruit weight.

  • h Asp, γ-aminobutyric acid, Leu, Glc, dehydroascorbate, fumarate, pentanal, 3-methylbutanal, 3-methylbutanol, 2-methylbutanal, 2-methylbutanol, isovaleronitrile.

  • i Anther length, Brix yield, flowers per plant, fruit number, inflorescence number, pericarp per width, seed number per plant, seed weight per plant.