Table III. Illumina analysis of transcripts encoding transcription factors and regulators following N deprivation
PIDaAnnotationbTIDaT +NcT −NcLog2FCdFDRe
Transcription factors
    115124SBP11512430−26.54.2 × 10−01
    425069CPP3998853325−5.95.1 × 10−23
    126810NAB1, involved in the light-regulated differential expression of the light-harvesting antenna, CSD12681023,3571,253−4.13.5 × 10−36
    119948MYB-related119948503−4.01.5 × 10−07
    191829FHA19182922115−3.81.2 × 10−14
    147364CCAAT1473641199−3.64.7 × 10−10
    290169bZIP29017610,444895−3.46.9 × 10−28
    154254FHA15425430226−3.49.0 × 10−12
    119194MYB-related119194111−3.43.1 × 10−02
    285394FHA2854012,150207−3.34.3 × 10−23
    426624bZIP39708010,9071,271−3.02.1 × 10−21
    119283MYB-related1192839612−2.91.9 × 10−08
    194555C3H1945551,764336−2.32.9 × 10−09
    415440VARL411514843162−2.36.2 × 10−11
    417527C2C2-GATA41371410323−2.11.1 × 10−05
    96716SBP96716123−1.98.4 × 10−02
    426728MYB-related399133226−1.83.3 × 10−02
    186803GSP1; gamete-specific transcription factor, HB186803980289−1.71.3 × 10−04
    423729FHA397389391114−1.71.4 × 10−05
    112237MYB112237502155−1.63.5 × 10−06
    407701S1Fa-like425995363120−1.52.0 × 10−04
    104804CPP1048042910−1.43.8 × 10−02
    285882bZIP2858891,004367−1.32.0 × 10−04
    149734C2H21497346,5932,748−1.21.2 × 10−03
    171165TIG17116516,7057,723−1.01.8 × 10−03
    415443bHLH4093301813321.07.9 × 10−03
    393055bZIP42110521391.01.0 × 10−01
    393622bHLH4201683175931.06.7 × 10−03
    399062HSF4227221,7763,3231.01.8 × 10−03
    186995RWP-RK1869953,0855,9071.07.9 × 10−04
    416794AP2-EREBP4108033136121.12.4 × 10−03
    426843PLATZ397100801581.16.8 × 10−03
    298349MYB-related2983564519121.12.8 × 10−03
    205561MYB-related2055665,27111,1321.11.4 × 10−02
    147286bZIP1472869061,8891.22.8 × 10−04
    419111C3H4121523297041.23.5 × 10−04
    342954MYB-related3429617571,6361.22.2 × 10−04
    130971G2-like1309713006801.33.5 × 10−04
    417388MYB-related4131241,2912,9171.31.5 × 10−04
    187531bZIP1875318031,8971.32.2 × 10−04
    189471CCAAT189471791891.43.8 × 10−04
    196473G2-like1964735511,3491.41.1 × 10−05
    415966MYB-related4099094101.42.7 × 10−01
    321493TAZ3215009,87925,1051.45.9 × 10−04
    205919AP2-EREBP20592423611.54.1 × 10−03
    347478None3474859312,5931.61.8 × 10−05
    205871C2C2-GATA2058761,8675,3901.63.7 × 10−07
    19751AP2-EREBP197512979251.71.1 × 10−06
    183777bHLH1837776,89521,7261.81.3 × 10−08
    290479SBP2904861896161.81.8 × 10−07
    195916RWP-RK19591611361.86.8 × 10−03
    284832MYB-related2848391425322.06.3 × 10−09
    148404AP2-EREBP1484041,3245,6342.21.4 × 10−10
    414856SBP4111301,5206,6892.22.8 × 10−12
    146990VARL14699014612.23.8 × 10−05
    205642NIT2, nitrate-regulated transcription factor2056471,3667,9242.67.5 × 10−18
    117291MYB1172911177402.81.1 × 10−13
    195838RWP-RK1958381087182.83.4 × 10−16
    116658MYB-related116658564523.12.9 × 10−16
    153934bHLH153934827053.22.5 × 10−19
    195891RWP-RK1958914043,8253.38.9 × 10−25
    424240C3H397539192733.98.7 × 10−19
    118761SBP1187611425.52.4 × 10−08
    405949bHLH390447101,8217.64.3 × 10−62
    177225bHLH17722571,6668.01.2 × 10−62
Transcriptional regulators
    206670SNF22066771067−3.83.3 × 10−09
    143060PHD14306033224−3.72.1 × 10−15
    401818PHD41780272−1.73.5 × 10−01
    325701TRAF3257083,7401,118−1.63.2 × 10−07
    146398TRAF146398372113−1.65.6 × 10−06
    169174SNF216917420967−1.58.1 × 10−05
    287740PHD28774731−1.57.9 × 10−01
    377090GNAT377097821290−1.43.9 × 10−04
    151030TRAF151030406156−1.34.1 × 10−04
    142283HMG14228311,6474,587−1.21.7 × 10−03
    142152GNAT14215218980−1.14.7 × 10−03
    172711SET172711549233−1.13.5 × 10−03
    115484SET11548439711.05.8 × 10−02
    193146TRAF1931461,0321,8991.02.5 × 10−03
    145759TRAF1457595031,0041.12.2 × 10−03
    154505SET1545051,3042,7601.24.5 × 10−04
    308637PHD30864420491.41.3 × 10−02
    188181TRAF1881812657231.53.5 × 10−06
    282628GNAT2826355841,6841.62.1 × 10−06
    192899HMG1928991,2614,0971.83.7 × 10−08
    205788GNAT2057932157822.01.4 × 10−09
    423513HMG3984141491,1783.12.5 × 10−19
    321619PHD3216260226.01.0 × 10+00
    143723GNAT1437230326.62.5 × 10−01
  • a PID and TID are the protein and transcript identifiers for each gene model for C. reinhardtii genome version 4.0.

  • b Annotation indicates gene name, family, or predicted function.

  • c T +N and T –N are the total number of hits for each gene model, from either N-replete or N-deprived conditions.

  • d Log2FC is the log to base 2 of the difference in hits between the two conditions, for each gene model.

  • e FDR refers to the false discovery rate for each gene model.